PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016495902.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 282aa    MW: 32470.3 Da    PI: 9.6765
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016495902.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00063116139123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     +kC++C ksF+    L +H  + H
  XP_016495902.1 116 WKCGYCRKSFRAEKFLDQHFDNrH 139
                     58**********999999976655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.725116141IPR007087Zinc finger, C2H2
PROSITE patternPS000280118139IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MENLRQRRAK NPYSLLLSFV LIIAVSSSIS ATSPLSHSDQ GTEQHASSPE QDKPRVHEVH  60
CSRDRSRAAW KVIEEYLMPF VEREKYELPR QCRLHPSNDI FRDQEEHKIH LDVNEWKCGY  120
CRKSFRAEKF LDQHFDNRHS NLLDVSHSKC LADVCGALHC DLVMEFKSKK AKCNPAAAAK  180
NRHLCEGLAD SCFPANKSPS ATRLHELFLR QFCDAHTCAG GRKPFSRGGK KHTNRFYLAA  240
SVLTLMLLPL FYLIVYLYQR EMKKGTQELR RITKVGRKAK PS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0144300.0BT014430.1 Lycopersicon esculentum clone 133748R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616977.10.0PREDICTED: uncharacterized protein LOC104109397
RefseqXP_016495902.10.0PREDICTED: uncharacterized protein LOC107814911
TrEMBLA0A0V0I0R00.0A0A0V0I0R0_SOLCH; Putative zinc finger family protein-like
STRINGSolyc03g111370.2.11e-180(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80841216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.11e-105C2H2-like zinc finger protein